Scaffold Ga0116215_1176522

Overview

Basic Information

• Taxon OID: 3300009672
• Scaffold ID: Ga0116215_1176522
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 945
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090816	Metagenome / Metatranscriptome	108	Y
F098277	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116215_11765221	F090816	AGGA	MRNLIQPPPSMHCELCDGELRFKRIEPDDPAFDMEVEIFVCSKCGHVHSFPVIHDPYAAHTASSMAPGKVGQPGGSGSNRLA*
Ga0116215_11765222	F098277	AGGA	MPDIDSSEIEFQCPSCGHELKQTVAGLKAERKMICPGCGIGINIDTDKLANAAEEMQKAIDKTPSEITIKFFR*