Scaffold Ga0116148_1339058

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1339058
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054898	Metagenome / Metatranscriptome	139	Y
F101100	Metagenome / Metatranscriptome	102	N
F103499	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_13390581	F103499	N/A	SGGRLNIDWDGLLRVHELIHDRIALEGYVCETCDTKGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEIRRL*
Ga0116148_13390582	F054898	AGG	MKAKLKIEETRAGYRCRVCGRRFRTEEAAFVHQSYDCSQMKLVED*
Ga0116148_13390583	F101100	GAGG	MKSVFRVESANEEVVRGGWYLLADSLAAAREVYPAHLFPSMTLIEVGKGLCVECNRRAVDALVEE*