Scaffold Ga0116106_1008253

Overview

Basic Information

• Taxon OID: 3300009645
• Scaffold ID: Ga0116106_1008253
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3956
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F058360	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116106_10082531	F058360	N/A	KSTVYNAVTLVWIGYLKQQPQLVPKVEAATHANTLGMALSTVPAVSDPDASFMLRVEQAVDRVLSRSDWPRPAAEGSRVVSRKPNPEESN*
Ga0116106_10082532	F003832	N/A	MMNSTAKQLSNAANWPPEEGQIISLKSSTESETAILREVRWGLGWRDFILEDGRVIPEHRISGCPQPQAWRKISEVTDQEREECEERLLSMAGAGMDPRKRDQSFWAELNQYLAYTYLRFKPAGSKIQDQDKDKDKDRNKER*
Ga0116106_10082533	F005268	GAGG	VSRTDDEPDELQVWRVLSEAGLVEIRLDEFAERIRDVKRIVTGRLRELLEFNTGVQECESAAYSLGTLKGLELKVLANAPKPPDPPKI*