Scaffold Ga0105173_1004363

Overview

Basic Information

• Taxon OID: 3300009622
• Scaffold ID: Ga0105173_1004363
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1827
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -24.9939
  • Long. (^o): -35.9974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105173_10043632	F097503	AGGA	MDCDTFDHVVEMFEQKMIEGCIADEFKCTYTEETREFVAEINGKFYVAMIREKK*
Ga0105173_10043634	F060975	N/A	MVAKHSEKFNKPKTIRDKKKDYYRPDVKRNFEEAIEDLDFDEHNKKNAIIIQYQDELARSQEDGWPYED*
Ga0105173_10043635	F049037	N/A	MEGGRACPDFKLFYDTGKITHHDRSPNWYIDMPPMTITVRELSDLCGFGKETNKLKHWLGLRVYPLIEDPLGFIFLRHLDDQIEDLYEGKSSKRLRHAKAACSKVVLEAKVRESSARKQDNEGTMVQRKMGRTITTVRSDEDSSEEKHRKWVKLSETIW*