Scaffold Ga0115103_1856964

Overview

Basic Information

• Taxon OID: 3300009599
• Scaffold ID: Ga0115103_1856964
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.754
  • Long. (^o): -122.0208
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F051139	Metagenome / Metatranscriptome	144	Y
F072257	Metagenome / Metatranscriptome	121	Y
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115103_18569641	F005129	N/A	MNYKIKIAEVNKSFSLAHHSYIDLGVFTVNATTYSFLYPAVKTDWGCDMNETELEFLVNNKKCKYVGFKELYTQLYGNSFATFEADIIRQ
Ga0115103_18569642	F092077	N/A	MTKELSPLQRSFDRINELIPNNSDVLLRCSLYEMCVELTNKSFAEGINTKY*
Ga0115103_18569643	F072257	N/A	MQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFSYEQGNVPEHCFINSCMWAYHAAISSRDEHAEPCRRNTHCKR*
Ga0115103_18569644	F051139	N/A	MQKAELELPVKQFHKLYDFLGEILDHEAETNDFNMENSDIELIEDTRNELFNQIPDEKPTETTYAFTTAVDAHQVTPLKLYTVRRCTDHGSGFLIINDRRSEVYCIENGCSHLSSDQSENWNLITVTNK*