Scaffold Ga0115011_10118958

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10118958
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1887
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F056889	Metagenome	137	Y
F068144	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_101189583	F056889	N/A	MKNLSSEEQITLVVIGIAIGIAIGFVLKTFVDTYYLVGSLPL*
Ga0115011_101189585	F068144	AGGAG	MWHEDKKHYLLSGQQLNQILAMLQMISDRNPDIEKLNEFIRNLKDLRAYNDILDEFIFSNQKKLPDEIKPVGERDSMTLEEMLAGLELRLMDKRNGKN*
Ga0115011_101189587	F002249	N/A	MRYGKKYKSYPYTVPINHKALQHTRIKELQIRMMRWSAWVKDNRIPNRELDKDKWQHRFTFTLKCQKRVGKLNKEELKMLNRLWKIYNYYGTKENT*