Scaffold Ga0115011_10111348

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10111348
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F037480	Metagenome	168	Y
F057352	Metagenome	136	Y
F086310	Metagenome	111	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_101113481	F106118	N/A	VGDLVKCMTVDGRPVGLIVERFFFVSEPSTPTGIFYVLIPGHEDPFPIRTRQMELVSASR
Ga0115011_101113483	F037480	GGAGG	VQVGDLVRMRGGLPATGIVLRTKPDGINRGTPHIRVKVCWIEDAEVSWEPKKWLEVVSASR*
Ga0115011_101113484	F086310	GGAGG	VQVGDLVKHFLTEQVGIVVTIHNAASSLASVQVLWTTQGESLFGPGTKEWCSKNSLTVLTTA*
Ga0115011_101113485	F034211	AGGAGG	MAYLKTNDLVIIPNKAGGNIQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPVGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGPWIEKMIEDSRAKRESA*
Ga0115011_101113486	F057352	GGAG	MMKLWVMHGTYEAELFTSIHLTEKGCALACIADVIDFLGVDSDETALQAINDCYPFTETDGEQTEPFEWNRDKLKEMSSKELWKIFADWTETCWERMSDRSYYIDATPQMVQA*