Scaffold Ga0115011_10013120

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10013120
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5508
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F053549	Metagenome	141	Y
F074152	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1001312017	F053549	GGAG	MKVGDLVKWENVLNDSMDHHREDHGIVIKMSRTGHDTESAQVLFTDGETWWLDTQRLEIVNETK*
Ga0115011_1001312019	F004771	GGA	MKIAIKVGDLVKMGTHDTGLVGIVLERCPKAISTTPAQIGIKWFGGSGKTDWEPEAWLEVVSEGR*
Ga0115011_100131203	F074152	N/A	MPTIHRERNMRLLTTFVLIGTVDSMDDFLATVEINMNPATEKPGYAVMPLTAFPCEIKEGDNFYILKLTEESIPVIICKDKLEDIKSNDGG*