Scaffold Ga0115011_10013042

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10013042
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5524
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F028003	Metagenome / Metatranscriptome	193	Y
F081356	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_100130423	F081356	GAGG	MGKVIEGKYKVIQDYTSIEGALYKNEVVKVYDNNTRPGHIRAKDSMGRVWFVPQKYLKKI
Ga0115011_100130424	F028003	GAG	MCDKGQNKLTSDYLSFLKFKEVQNALVKISQTPGRTYMYEGEVHEKGMTCAQADRVLDNIFNAKTNLEMIGFIVKVARQIGFHEITLPRKIRWAK*
Ga0115011_100130428	F002747	GGAG	MAKDANRFFVEVCLEVYVPDQGCGDKAVKNENLDAEWFANEVCSQIPKLVNKEWEYSERPYSVNWAHKGKVERG*
Ga0115011_100130429	F006347	N/A	VYYIKRRYIMIKKIKNLLETLEQEINDGYNTLPDYDKNNEGKTYINGAQVTLYELQKQMETLEQGLRLGKNFSLLGEDNG*