Scaffold Ga0115011_10003785

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10003785
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10265
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047732	Metagenome	149	N
F087330	Metagenome	110	N
F092220	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000378511	F092220	AGGAG	MNPVKSIEPITEKDEIEKFQTLKEQVFKEYADYSLEKLYNFNELLIDTIHQLQFKQMAMQELITHRLDNICPKETTN*
Ga0115011_1000378515	F087330	GGAG	MSKVSGRLCIKFEVDTKKFKRDYVTFLYNIVKGVLADWDEYYEGIHLSIEEDGYVEED*
Ga0115011_100037859	F047732	GGAGG	MQSGYAICTSDLSKILTIAPCKTKFIFVKIINDQVLTRAICFNNLSQAKSIDLRVRKKFDDMPETKIVNVALLYNRISKQNGLSHI*