Scaffold Ga0115011_10000018

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10000018
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 179318
• Total Scaffold Genes: 237
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (68.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020879	Metagenome / Metatranscriptome	221	Y
F022909	Metagenome / Metatranscriptome	212	Y
F029485	Metagenome / Metatranscriptome	188	Y
F034245	Metagenome / Metatranscriptome	175	N
F040179	Metagenome / Metatranscriptome	162	Y
F040866	Metagenome / Metatranscriptome	161	Y
F048328	Metagenome / Metatranscriptome	148	N
F051948	Metagenome / Metatranscriptome	143	Y
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_10000018106	F020879	N/A	MTSKQKKQMHNFVQTTLKIVGCSLLFLGLTMSLGISHNPHMELYAYIMLFVGTIIIMTHSLRGHDHLYLLVSSAGFLLVSNAFLGTETAIMLADSYGIALTEEQTWFAKYGKLFVEILKAIS*
Ga0115011_10000018110	F089156	N/A	MLIIQFTEQIDPSTLPVEVIQSFKYNTYLVDCEISEYDVISSITSQYPISSMQSNEDCAYIDVYERLTTSYTTVYAEDTLAPLLEKLDFLEALKPQILCFSWQMDRNYIVDYRIEKLIEAGNMVVCAGGNQDLPVHDISPVAVDGTIKVGGNLHDGHHQNWIDIYDVTVPNEPNSNKAVHTVCGLMANKELELDYTLGYYSDSSVRSAPWPLRLAQTPSNETKFYEFNPISNLRYCAGEHLIPVRPGDQVSMLYGGIELEDFVGYQYVECNTDLPRGITFDLESGWLYGTFKFKTNMFHRFQVDINGQLFEYHMISCDADNKLTYEDVKEKYFNRPYDSPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRGYE*
Ga0115011_10000018111	F034245	AGG	MRGVTFSEFKDGQNVDMFYHAPDCKPGTPMQEAIRTAKEIRNKYSKDIYVWCDYSVQHMYSQLCMQAFKMAGIEFVAAIPVLSNNLTKRENDCSIAYCEQRNIPYELFHIDVEELFNGPELEKYGEKFPTTQPQMTIVGKYFDILPKCCLVYPGFMAHVSNSDWTRTKNNGFMPFVPHQTQEHAAEVSGLEYTNFQEHYVNMYTSWMFTQSYGEVLKSATKDFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDSELRQRLSQFGPLLLKYASLQYTVKVDTRLKEMLETHYETSFEFINKLF*
Ga0115011_10000018114	F022909	GGA	MDDTTNTEILRTFFKGEIGCIEYTDKWLPQLEEFCSIAKDLGYVSNESPEAMKVDEIQYHCMIHIPTNKIYAVAGVQYMPEYKEGYYRIWTRLCRIPNEDIPMTRTRRYGRGEMQEFDGLLYFNCDWATKQDNFKATFGTTLANKAYADSYVRSTNTITDYVARNWWRRKGIAEPEGITEFYAVPQVVWRMHFDKFKEL*
Ga0115011_10000018132	F029485	AGG	MDSYWEWNKENFPWHYDPSSKEKDVQYVGRFTCNNFDDIIKTAVSRFKPGDEYDEVSIKGEPYNDEAKEIMEGYHNDLTRAGFNQHNTGGRQTRDNLPRQLVSMGQKSGLWNPQIMFLEQPPGKFIPWHRDSYNNYRRNFAKVSDTTEVIRYLVQLNDWQWGHYVSVGNDVIHQYSIGDIHCWPEGIYHCTGNAGLWPRYCLTITGCVTESALHLKDPKEIKIP*
Ga0115011_10000018172	F051948	AGGA	MVEKIKHWANVCKIHWREIITLSIALHWAVDLLIIVPITLTIGYFTGVHFGGH*
Ga0115011_10000018218	F040179	GAGG	MASFAEEKRLRAHLELIAEGGTYAGYFSQGTNADGDASAYFITNDSDITAAEALLDAKIAELSDVGGETAGGEGPSEFTGYTAIHFDNSISDAGVDYRTWFVDANGDYFKADNGNSDTIAQITDSTEINTLLTDSGYVVV*
Ga0115011_1000001842	F040866	AGGAGG	MSSKSLYETFGNEINYEERRGKLVQFLENNTINFPLPEASIDILVEMVPQDFKGIDPNKVEIIENRLTSIGFTGPTARTLASALIQVADQQGVHPISYFELNEESIKLAEETYKAINTIRPKGNKIGLTVDKFNKDSKLANVIRP*
Ga0115011_1000001875	F048328	GGA	MNQTKLTIHKGFDSQLNFHVRNRDRVLQNLSGKTLYASIINPNTNKRVVFKQLTLVNSGTTGEAKLNFVPGDLTNLSPGLYQISISESSDSGVTQSPLYANQNDRIITDLEIRSSLEYDPVATQEQTTFTDQGSNVFVTSAMYGNQDNNFTSSQHTIGLYMTDFVGNVTIQGSALSSTPTQDSDWYNINVQGDQGSDAVPFSSAFNGIDAYNFNVNTNWVRVKFDKTSGSLDKVLLRN*