Scaffold Ga0105155_1041525

Overview

Basic Information

• Taxon OID: 3300009591
• Scaffold ID: Ga0105155_1041525
• Source Dataset Name: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 834
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Nevada, Gerlach, Sandy's Spring West
• Coordinates
  • Lat. (^o): 40.653
  • Long. (^o): -119.3749

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089858	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105155_10415252	F089858	AGGTGG	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPEFEESGLMEIMVSKVGVDGLLNIPVKHGEIWVEELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRRGVREVEEE*