3300009591: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316

Overview

Basic Information

• IMG/M Taxon OID: 3300009591
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127783 | Ga0105155
• Sample Name: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 233530326
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	8
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Nevada, Gerlach, Sandy's Spring West
• Coordinates
  • Lat. (^o): 40.653
  • Long. (^o): -119.3749
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014385	Metagenome / Metatranscriptome	263	Y
F019254	Metagenome	231	Y
F063724	Metagenome / Metatranscriptome	129	N
F080093	Metagenome / Metatranscriptome	115	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F087246	Metagenome / Metatranscriptome	110	N
F088087	Metagenome	109	N
F089858	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105155_1003216	All Organisms → cellular organisms → Bacteria	5161
Ga0105155_1009916	Not Available	2518
Ga0105155_1012268	Not Available	2161
Ga0105155_1024765	Not Available	1256
Ga0105155_1027232	Not Available	1165
Ga0105155_1036506	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	923
Ga0105155_1041525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	834
Ga0105155_1054502	Not Available	671
Ga0105155_1057487	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	644
Ga0105155_1062630	Not Available	604
Ga0105155_1063355	Not Available	598
Ga0105155_1068905	Not Available	562
Ga0105155_1078848	All Organisms → cellular organisms → Bacteria	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105155_1003216	Ga0105155_10032165	F063724	MPSSWLQRWRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLAPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTADTPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLGASLLAVSVPAPALTAWMHMPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE*
Ga0105155_1009916	Ga0105155_10099163	F084856	VLLGSTGILIFEDLRYTFTRIELTERGDAMFDISDLAIVTHIYTKPHAEALMETLPEWVKLAPSAQIFVSYYLNRFQPSDFHSLMVYDRVDFIPVANSSYGAAYDTLLERTVDKPVLILAPYAIPKEWFIGANGSLFKWFESYAVIGRYKQPRILVADAILMPLVAPVIVELGRLQMDCIAIRNDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGFPVLTLTRNCNPVRYVKKDDGRTEKAGRR*
Ga0105155_1012268	Ga0105155_10122682	F084856	MSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGCYQKKFQPSDFQFLETYDRVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQPSKAHKK*
Ga0105155_1024765	Ga0105155_10247651	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAFTGLSAPPYNLRVENFLQFPFLRGMTARRFVQKLRRLGVTWNNDVMRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0105155_1027232	Ga0105155_10272322	F080678	MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVEDFLKFPYLRGMTARRFVQKLRRLGVGWSWNDDAVRRSVLLAVGYRLLEIEEFEHNRIFGRKEEVSVNV*
Ga0105155_1036506	Ga0105155_10365063	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELEDGRFTINLDDPDDPKITCAEVQVVHEDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEE*
Ga0105155_1041525	Ga0105155_10415252	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPEFEESGLMEIMVSKVGVDGLLNIPVKHGEIWVEELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRRGVREVEEE*
Ga0105155_1054502	Ga0105155_10545022	F088087	MMMMLKVTDGSVWKEVGVSKSSCEICGRKGSARIYECVEGKWAGVRVVACPEHAQKAVEVFIAGGEE*
Ga0105155_1057487	Ga0105155_10574872	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALVGRASAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF*
Ga0105155_1062630	Ga0105155_10626302	F080678	MFGRQVDTQTTPIAQVYENWERIWLGEREIRRFLAFTGLSALPYNLRVENFLKFPYLRGMTARRFVQKLRRLGVTWSWNEAVVRRSVLLSVGYKLCEVEEFEHNRIFGRKEVGANV*
Ga0105155_1063355	Ga0105155_10633552	F014385	VKRPSREVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQRTLAEATLAKVRRMLNL
Ga0105155_1068905	Ga0105155_10689051	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVKKLRRLGVTWSWNDDSVRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0105155_1076651	Ga0105155_10766511	F080093	VQSVLHILRELVASGGVRLVGDAPDEERALFTQLTATRGFAQALRHLATAHVAGAAVVEIVWGDDYMPHALRPAPPEMVQFGIGEDGEIVAVRLTTSAGVQELPLTHAIIVDAYPAWHIYGVRELPIHALSKYLQAYDRVLRSMDLYLQRHAVPTAVAKTPASYTETETQQLY
Ga0105155_1078848	Ga0105155_10788481	F087246	MDWETRMDETYELRKALDALEHAQQVMVHHAQGYRQVATLAGLALERIGAVQGSQNWVQLQEALHEVEALLVAIVQQATERGENLMECANGYENAKR*