Scaffold Ga0105230_104708

Overview

Basic Information

• Taxon OID: 3300009577
• Scaffold ID: Ga0105230_104708
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1215
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 8.2514
  • Long. (^o): -49.9993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N
F045147	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105230_1047081	F045147	N/A	VNTDSGTGIYQTGIIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDEDNMNMIDTGIGL*
Ga0105230_1047082	F025299	AGG	MIIEEIPFFVEFIITGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKESNGLEDELDSYINNAPQIAQKIQAELTYLKENNATPEQMKSLESKLELLNKVQQYEPLIKMIGKPALKKIMSIIDRV*
Ga0105230_1047083	F002150	N/A	LVSLTAAKIGVGVARKGKKEVGDLYQRKLGYDFVNLVTKLVLFYSIAFLIAKYMEAVIYFQGGLSTIAGFFGIKMAQADQLPRQWVELFVDTNQQTYSSTPTGAGQFNPPGWDKPYDYGTPEHQQAEPYLFPQKEVKYKFWDLINAIVVFYIGWEAYKYYDNANKDPDKKVDFLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK*