3300009577: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500

Overview

Basic Information

• IMG/M Taxon OID: 3300009577
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127568 | Ga0105230
• Sample Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28921175
• Sequencing Scaffolds: 35
• Novel Protein Genes: 41
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1
Not Available	28
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 8.2514
  • Long. (^o): -49.9993
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F000161	Metagenome / Metatranscriptome	1845	Y
F000904	Metagenome / Metatranscriptome	843	Y
F001135	Metagenome / Metatranscriptome	767	Y
F001383	Metagenome / Metatranscriptome	709	Y
F001487	Metagenome	686	Y
F002030	Metagenome	601	Y
F002150	Metagenome	589	Y
F002274	Metagenome / Metatranscriptome	576	Y
F003270	Metagenome	496	Y
F003761	Metagenome / Metatranscriptome	470	Y
F004794	Metagenome / Metatranscriptome	423	Y
F007755	Metagenome / Metatranscriptome	345	Y
F008691	Metagenome / Metatranscriptome	329	Y
F009367	Metagenome / Metatranscriptome	319	Y
F010690	Metagenome / Metatranscriptome	300	Y
F011673	Metagenome	288	Y
F013312	Metagenome	272	Y
F016014	Metagenome / Metatranscriptome	250	Y
F017046	Metagenome / Metatranscriptome	243	Y
F025299	Metagenome / Metatranscriptome	202	N
F026289	Metagenome	198	Y
F027204	Metagenome	195	N
F027540	Metagenome / Metatranscriptome	194	Y
F029903	Metagenome	187	N
F030781	Metagenome / Metatranscriptome	184	N
F034594	Metagenome	174	Y
F040137	Metagenome	162	Y
F040146	Metagenome	162	N
F045147	Metagenome	153	N
F045157	Metagenome / Metatranscriptome	153	Y
F050480	Metagenome	145	Y
F054156	Metagenome / Metatranscriptome	140	N
F054779	Metagenome	139	N
F057437	Metagenome / Metatranscriptome	136	Y
F064624	Metagenome	128	Y
F068931	Metagenome / Metatranscriptome	124	Y
F074138	Metagenome	120	N
F077781	Metagenome / Metatranscriptome	117	N
F097130	Metagenome	104	N
F101842	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105230_103911	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1405
Ga0105230_104708	Not Available	1215
Ga0105230_105482	All Organisms → Viruses → Predicted Viral	1086
Ga0105230_106727	Not Available	931
Ga0105230_107975	Not Available	812
Ga0105230_108930	Not Available	742
Ga0105230_109015	Not Available	736
Ga0105230_109050	Not Available	734
Ga0105230_109072	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	734
Ga0105230_110268	Not Available	663
Ga0105230_110284	Not Available	662
Ga0105230_110475	Not Available	653
Ga0105230_110873	Not Available	633
Ga0105230_110894	Not Available	632
Ga0105230_111480	Not Available	606
Ga0105230_111670	Not Available	599
Ga0105230_111815	Not Available	594
Ga0105230_112062	Not Available	584
Ga0105230_112343	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	574
Ga0105230_112719	Not Available	560
Ga0105230_112838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	556
Ga0105230_112846	Not Available	556
Ga0105230_112898	Not Available	554
Ga0105230_113248	Not Available	542
Ga0105230_113433	All Organisms → cellular organisms → Bacteria	535
Ga0105230_113783	Not Available	525
Ga0105230_113830	Not Available	524
Ga0105230_114006	Not Available	518
Ga0105230_114091	Not Available	516
Ga0105230_114303	Not Available	511
Ga0105230_114491	Not Available	506
Ga0105230_114504	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	505
Ga0105230_114560	Not Available	504
Ga0105230_114666	Not Available	501
Ga0105230_114691	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105230_103911	Ga0105230_1039111	F077781	AHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*
Ga0105230_104708	Ga0105230_1047081	F045147	VNTDSGTGIYQTGIIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDEDNMNMIDTGIGL*
Ga0105230_104708	Ga0105230_1047082	F025299	MIIEEIPFFVEFIITGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKESNGLEDELDSYINNAPQIAQKIQAELTYLKENNATPEQMKSLESKLELLNKVQQYEPLIKMIGKPALKKIMSIIDRV*
Ga0105230_104708	Ga0105230_1047083	F002150	LVSLTAAKIGVGVARKGKKEVGDLYQRKLGYDFVNLVTKLVLFYSIAFLIAKYMEAVIYFQGGLSTIAGFFGIKMAQADQLPRQWVELFVDTNQQTYSSTPTGAGQFNPPGWDKPYDYGTPEHQQAEPYLFPQKEVKYKFWDLINAIVVFYIGWEAYKYYDNANKDPDKKVDFLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK*
Ga0105230_105482	Ga0105230_1054821	F045157	SGIAKSSASSGREGIRNKISRLKKTGHIREAQSALMDMINLKSQTTRK*
Ga0105230_106727	Ga0105230_1067272	F068931	MSFRPALIKPVYDVSNFGTGVTLPLNCLSGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMAGIYPSNDTDFDYMALGC*
Ga0105230_106727	Ga0105230_1067273	F010690	LEAYECNTGLQEGATSQFILSGQSQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDESNFTTATTTTGNSFTINDGMWVEDLYVSVFTAVYTESQSLTGYGTFSSNDFGNSLPLKVPMQPGAAALGATGTQGIMKLAAYHNTHMPMKTSCKITTAFTNDINQTGTTSFILGVGYTKQ*
Ga0105230_107975	Ga0105230_1079752	F003761	LAAIVELNTTEIWSHEPCWYIGEFNQSAPDSQSVRRSQTITVIRNDKRVKLTRDLGDARLFGEEFQLICGAPDEKGGGEAMYTVGEALQMAQDMNNMPPPKTEVRPKDWNKIFWENIEERNLWKRGASTFGPMHRKQRNT*
Ga0105230_108048	Ga0105230_1080481	F000060	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSQQGSLEEAFELTHDEIKILKKLIKELYVLAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKQTKILEGNVSPQLKIELKGVEDETV*
Ga0105230_108930	Ga0105230_1089302	F002030	MIEVLVFGLVALSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYETYTSILGFPRVSTPQKGLYLKHFIDEPNWIYLWVLGDGNVPMSYQIIYSRETHNSLEGVSGKSEEGKFMVLGVDESEMDGNEEGEEGEDSGGGFTIGGDMSFYEWDFETNLPSKNVRQ
Ga0105230_109015	Ga0105230_1090151	F030781	AFTSTYTVSQSLTGYGSFSSNDFGNSLPLKVPIQPGCASLGATGTQATLALASYHNTHMPMKTSCKINTAFTNDIISTGNTSFIMGVGYTKQ*
Ga0105230_109015	Ga0105230_1090152	F027540	MSFRSEPGFKPALIKPTYDVANFGHDSTLPLNCLSGSNTVTLTPSSATFVQVLEDSRVPIDEVDLFITDSDKMEMVHAGNDTDADFSWEWTPDMSAQAYQISLNFAVGMKVSAYTSGNFKISDVQVIIKQVGGGEGDFVYLNKIID
Ga0105230_109050	Ga0105230_1090502	F011673	MNNQQSKVLPIYLQPRILAAVSFIHRSPNKEIGLERINKVSRKLSDREMMYVLSLLVFDNILDMVRDSDEFKNYVSTKRTIN*
Ga0105230_109072	Ga0105230_1090722	F040146	MTLDKMTINKKGQPLAKRVKMKNGGGVGIQTHGNKLAKALNTKRPDQSLFQNEDGYLTGGIPIRS*
Ga0105230_110268	Ga0105230_1102682	F034594	VELFVDTNQQTYSATPTSTTQEGREFNPPGWDKPYDYGSVQHQEAEPYMFPQKEVKYKFWDLINAIVIFYIGWEAYKYYDNASKDPNKKVDLLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK*
Ga0105230_110284	Ga0105230_1102841	F097130	AYKYYRNGGRDFLTMAIFSLMGLMVGVLSFSKFLGKFSLNRFQEENK*
Ga0105230_110475	Ga0105230_1104751	F064624	DTGSGQQSGPGRGFLDAQDVHGGVMTQQQPPVPVPVQLTVDDMTTLIQTDETSRLKVQGIALQRRVNELEAENAELKAQIAEPDTTTTNNKNDSKLTAVGAD*
Ga0105230_110873	Ga0105230_1108731	F003270	AANKLAAPVAFWSQLSQKDYEVLNASPQYHALDYIGKLKVAANILTGSLTGKVAFSDQYNPSPNGSPRINPAGIINKWVGIGLAGKIYSLVGKQMGLPEQAAIGRIGTKIIYGGAVGGFFDPPSAQGRVSTYAVTPNVMVQNRATTDRSYGVARRNRGFVPLDSFDYSTGSAFR*
Ga0105230_110894	Ga0105230_1108942	F001383	MKKFTIEVSHASPAQLTTIALDLKIMSNGWEKHGPRIVINGRQVQAPSLRIPGSGHKHGPRNGKPQATSHKLATFT*
Ga0105230_111133	Ga0105230_1111331	F016014	MNSILKAKEDAIVRYELRGGGCGGLIAEWKTEPHHEPEQGEMTWDLAHGKFVVDEATTSFIDGGVVNYDISNFMPNFIVSVPDKGQ
Ga0105230_111480	Ga0105230_1114803	F001487	MKKFTLEISHASAAQLLTIAAELKIMANSWEKFGPRIMINGQAVQPPKLRMAPTELS
Ga0105230_111670	Ga0105230_1116701	F004794	MSGSWDIATATSIGTGVAKTQINGGNNVTKPTQAVNLVEVVPYISSSGAMTVAQSLAVTLEIDSFSVDLLPKRIIVPPIQSGKGTIGNTVNPILEAYECNTGLQEGATSQFIISGQSQI
Ga0105230_111815	Ga0105230_1118151	F017046	MNKLKEIIKEGWDVFPPWLMALNIIAIFVGLFIIVFI*
Ga0105230_112062	Ga0105230_1120622	F027204	MRNDNKHWKKGIRVAKQFGGALAGRLGAAARPIAGALGYKKGERVYKKGGSAK*
Ga0105230_112343	Ga0105230_1123432	F002274	VLEDRIQINKEKNMAKTEVGYPEGGKKYKIEPGKVGQDPRADIVTNDFTPGQKIDKGTKVKVAGTRRMLASKNKTATWF*
Ga0105230_112719	Ga0105230_1127191	F009367	MKEVHSQLVDVVLLTQENGSTMLCRGGEDAVRRFWEIWPIVKAEFTGEKQLLQSIDANEIDQPYIPTTHM*
Ga0105230_112838	Ga0105230_1128382	F074138	MDWNQLYIHPSDDTTDDDIRDFVEWVSRKAERLGFRVELKRHQKIESTSSETVSYNPLDKSNEKH*
Ga0105230_112846	Ga0105230_1128462	F008691	MSSLAGYNVGEEATEVKKNLFENRDTFLMLVVAGVVGGAITRFIIPKSVTEGSVFSRLKSLFGYDQEEEEE*
Ga0105230_112898	Ga0105230_1128982	F101842	MMIESIIIAFSIREDMFLLVAMGALVVIGLRATKKVLDD*
Ga0105230_113248	Ga0105230_1132481	F050480	MKVEKEINGHLYITNDNLKRIADALEEILRLVKKDMEPRTKEKA*
Ga0105230_113433	Ga0105230_1134331	F000904	MDDHTKIYKEFYEHAMHLLNDHQKSPELVAGTMMAIAQRIYKTQLNDEEYREMMEVIKDAPVQPYN
Ga0105230_113783	Ga0105230_1137832	F026289	MNLMEEKKPKAKNEDEAFIDTLVKMLAESKQDLAWNEKFKAVVRKHFEI*
Ga0105230_113830	Ga0105230_1138302	F040137	MGGAARIFRRVFSPPSYTPPPAQTVAAAPAAKTTVSGATKMSKVRGQGSGVTGTIMTDATGIEEEANVSKTVLGGATTKKKKYKV*
Ga0105230_114006	Ga0105230_1140061	F001135	MTTIIYKDKKYKLPFVVKSHSTAMVKRTNGQSGQSIELPGFAACVYDYTMYMSATTEEKDRQTNQAPGFSDNQDDWQIVRNGLNFFRRYFAKEYMVQLD*
Ga0105230_114091	Ga0105230_1140911	F007755	LLKKIWNHELRKLVKHKFTITYETDGLPICPDAIHEQLDLAMVNIRKNFAAEYAKLPGLHRLRLEPCGDWFPEQQKPMRFKA*
Ga0105230_114303	Ga0105230_1143032	F054779	PRAIGEAIKMPSYNFSPIPDSLFVQDVSATAGGIGAGNIPGSARYAEGHVRLASLSETREGTDPTATLGTEWDVEDMIILRSRYEIVNFKAVEKTSTNASIDWTFYNRAPN*
Ga0105230_114491	Ga0105230_1144911	F029903	MAKGNFSPIPNSLEVHAVTSSATSLGSVPSAANYGEGYVRSYAVVETRDGTDPTTTKGKEWAAGDLIILRSKDELDGFKVIREN
Ga0105230_114504	Ga0105230_1145041	F054156	MLEALLFTGQIPEIDWEHGDDLCDCTFQRIGYWTNPYLARTLKIRLCCAWKVLAEQNPEIAALMQEIPAFDDYNRDCWVSEPAAWDSKEGDMPRALWHRQLSIQQEKPLE
Ga0105230_114560	Ga0105230_1145601	F013312	MLFVKGRNFTWVYNITCFPQVNQAYVVTILGLISSADNTTCNLFAVAAVTFIISLSATTSGAESSSDVPLADIALTLKRLKTALSVSVIVTVIVSAFPESSDTSIDLITAVVAVGTEYKVVADVLVKSTFLFTNVLAI
Ga0105230_114666	Ga0105230_1146662	F057437	LVAIPATILAKEIGKRGTKASGEFLEQKLGYNFIDLVTKLALFYVIAFMIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDVNQQTYTSAPTG
Ga0105230_114691	Ga0105230_1146911	F000161	MKKFTIEVSQASPAQLSTIGLELKIMANGWEKHGPQIKINGQQVQAPRLRIEGSSDKLQAASDKPKKDHNQMI*