Scaffold Ga0105249_10240782

Overview

Basic Information

• Taxon OID: 3300009553
• Scaffold ID: Ga0105249_10240782
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005056	Metagenome / Metatranscriptome	413	Y
F027785	Metagenome / Metatranscriptome	193	Y
F056381	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105249_102407821	F005056	N/A	FEQAEMILYAALDPAIASQARKGDFVRLLDHFDLLQSPIN*
Ga0105249_102407824	F056381	N/A	VRESKPQGKPIDVREEEDGRSERHPVMGWRGVEPTGDITPRESALTSVWSCITREFGQPPEERRQMTAVATLTGALSDRLTARRLQARMV*
Ga0105249_102407825	F027785	AGGA	MANPGERSINIVIDNKPKVLAGLSQKGTGAGTRGLPFLVMGSPRYRWIERAYPIRCD*