Scaffold Ga0105249_10018871

Overview

Basic Information

• Taxon OID: 3300009553
• Scaffold ID: Ga0105249_10018871
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6145
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007150	Metagenome / Metatranscriptome	357	Y
F020328	Metagenome	224	Y
F081696	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105249_100188711	F007150	N/A	TRREHMRLLRSKSETDRLLDTVGDSLAALSGGVNRSKLLKAGLIAGGVAVLTAKSAAISSIRRRMEGNGL*
Ga0105249_1001887110	F020328	GAGG	MAERSAPTRRFHLPSAVRGSAARIDAATARELVANGALLIDVRRKDDPAVTLEGALRIPPDEISEHLDEFSRDTPIVLACG*
Ga0105249_100188712	F081696	N/A	LRLDATVALMPAAITAPSSALGAGNGLAEAVRSINDGAEVLAQVRRNGRR*