Scaffold Ga0105238_10000001

Overview

Basic Information

• Taxon OID: 3300009551
• Scaffold ID: Ga0105238_10000001
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2036163
• Total Scaffold Genes: 1788
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 978 (54.70%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F002064	Metagenome	597	Y
F002279	Metagenome	575	Y
F002338	Metagenome / Metatranscriptome	569	Y
F007132	Metagenome / Metatranscriptome	357	Y
F007491	Metagenome / Metatranscriptome	350	Y
F024882	Metagenome / Metatranscriptome	204	Y
F037774	Metagenome	167	Y
F061939	Metagenome / Metatranscriptome	131	Y
F066879	Metagenome	126	Y
F072395	Metagenome / Metatranscriptome	121	Y
F101402	Metagenome	102	Y
F101406	Metagenome / Metatranscriptome	102	Y
F103772	Metagenome	101	Y
F105410	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105238_100000011163	F002064	AGTAG	MDSEMTAIETAPAILSNQQLNTVFQYTVEAYKTFEKLAENLPNPLTANMFKQFAVDERATRDLIEMKIAATGTSRSKVTLANDLAFQDILEGDLSYRETTEFLIARERTMERNLAQIGRGTSSIDRAFLVYLAASKRAHIVELERELELTKLDRDWFKREDAETRLVRGAATE*
Ga0105238_100000011199	F007132	GGAGG	MTRQAVRTTAGKVLRSDDLIADEKEVAAGFLKANPHFGNPHVVRCDWCRETRTLFRDENEGPFKLTTHGWLCETCNVRASSQEVKF*
Ga0105238_100000011234	F101406	N/A	VLPLSRGFIAALGGIAMTLLAWFGSWAWPGWPASIAIDLLGFTDFAEFPRFAKSGVVVLLIIINVGTWAAVIRAAMLLVRKSTSPAPP*
Ga0105238_100000011281	F061939	AGGAG	MNRTRGILAAALLVLFATGCFEIEQSIELKKDLSGTANFKLGVDMEPMITIMAKMQKEMSGDKSPLTKADIAAAKAEFKKKETKSTTESEDPRKQAEGGLPPGVKLLDVSVTEKEFGVTTNMKFAFDKLASLVGVKLNSKKEGEAGGDPTKKSVIDSPFQGLEIAETASTITIHTKPQNPADKVKSEAGEAGPKLDPETEKMMNDAFKNMRIAWKITAPFEVVSSNATRKEGKTLIWEYDWDKLQKLAASPKALDDLGVSVTYKK*
Ga0105238_100000011749	F103772	GGA	MKMRITSLLLLALAAGCASQSVPEPPEPNVVEIVSVPNHASVSLDCGSGTVVKGTTPLRVDVPKYPEVCTMEVGADDYRPLRMKFNRGLVLKQGVQLREDASHQLDQSASTFDMLLFPLQNLGDRIQNATMRKIRADYRLEVKLIPIAR*
Ga0105238_10000001283	F066879	AGGAG	LRLGVITLGHVHAEELSALTPHLQHLEQLVLDVPFDDPLSKHRAELNRAVDAATDDWLLIVREREIVDDAVACEITDAMRAQNAWGFRIRSIPMYAGKPLRIGVTDGELRLFHRRHLLRRGELGVQGTVVRLNNVLRSMSFETVAAHREYLEKNGVPHSLLRRLLLFVHHAIVTRARDANTLRYLWIEAGYDHG*
Ga0105238_10000001367	F037774	N/A	VRIAPPPRNEVNFAMVDSPSLQFLPRQQEAQIWKLDEDPIVIPGDHLNTYLGPVDAPQFARYETLDLTIGKYSTPGSNGFATVEIFRFPDFVKAFGAYSKQKNGNLRFLTIPNESFAKAHSVHVWRGPFYVRITGAGPGDTVLRLATFVADKMPPAPNKPAVFAFLPDKQRVPGSERYSADAAFGQPFLANSFQATFNVDNDLIDGIVIPAASKQAAGNILDQYKGLYLHNGKLLDPIPNLGEDNFTAEDRYLGRVVAFRIDRFVIAFNGFHERQHLLDLAASADQRILGTIRKQLVTADKQAENADNGNTSTVPAWMQNKH*
Ga0105238_10000001431	F007491	N/A	MTTRFSSAASALLICGALLTHCTGGQESSAAEEQAPKKNGIAVTTTSPTETAVQPVQVDAKAALKSISPAIPIYAGARYRDDLTRRDSVMIRNQYGPTAEVYTLATDDSFPQVYHYYTTYLAQFRAFPAQSPYPAPQTWRTLEVQLNQAMQDPFIPGDMLKPGDKQVTLQVAETEAEPKTVIRYVVTQKPIAAAEVQMPKASGVRNAFDRE*
Ga0105238_10000001640	F002279	N/A	MSSAPSPTAPATTDWSRRVADSIAQHGAWHTYLKLVEARAAYPDDLSLRGYTEILRNTIVRDFLAHPKGMHSVPKLTAEFLSNFDRFNLTAQEGYLMSLIDGRLDLQKLLILSPFDQFTTLFTLAKLQHERAITVPQ*
Ga0105238_1000000172	F002338	N/A	MQELKAEKPPESPADSDPATRLMARLVEEGFTTDLSEEDWRSYGEIIYRRAEKISFAAGETVFIFTRVHDLNEKILRQTSEAVVNSYKARSVAGKALSVLQSTTVYHCLVADGDQPHNDLLTGYVTRAGGATFIPVIIVPDINQVIYPDLEEKVASVKPRVEYLQYLLGERRETVNMHRPTVQAMWVSLGVVLVLLLAIAVSLIH*
Ga0105238_10000001852	F101402	GAGG	MIRRLAIFCLLFAAFGLSAQDSPYAPTRPLPLGDTLLSLPTSHIPSEGTWEVKFTHRFNQSLDQGSFSDRVHSLWGLDSNADVGIGFSYAMTRDLQATFLRSNASDDIESSLKYVIVQEAPAIPFSLAVRGGMDWRTERDITNRTSFFAQAIVSKQVGGRAEVFAIPTYVTNAGQQVSGSSSGALFKHAFNVPVGAALMVRPGLSVVVELTAKNRDLPSSMNGGDFGWAFGLKRAIGGHYFEILLTNSNATLADQYVTSTYQGTPLNKSDIHLGFNIERRFGRRSPKN*
Ga0105238_10000001898	F001750	N/A	MIPIVARYSSYNRRRMPKVTAEIPGELSRQIDRMIRDGWFPDQDAIVREALAHFVDAKTFLGDSPRMLHRFAADALNDSKPEVALKFVNRGLSLLPTQDATDFHLYQNLVELRVQILLVLDRNAEALTALEEAREMLPNNPTIAKWITRLQKVKSEG*
Ga0105238_10000001960	F072395	GGAGG	MGVCNWCGSAFPLTRSTRKYCTTRCKTNACLGRKPSRIRAAEVEALHELLQAELPSAELFRERLRAIIAPHLPPIAAEGTPLVPRLD*
Ga0105238_10000001991	F024882	N/A	MPCDHIGPAELIEMAETDLRERNVAPADGMRFRWSENPVDGMWASIVTEIERRGGQWIVTRLDRNREALPDGETGFRAL*
Ga0105238_10000001996	F105410	N/A	MAVETYDWIDTTNLSALVANFARVHMLLSMFDGDPQKWIEFLEWNGTDEERRRDLPFAEDLKRRIAEDPEYLNRLRHLVRDFSTLV*