NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129287_10331502

Scaffold Ga0129287_10331502


Overview

Basic Information
Taxon OID3300009538 Open in IMG/M
Scaffold IDGa0129287_10331502 Open in IMG/M
Source Dataset NameMicrobial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2W
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Delaware
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location
Location NameCape Shores, Lewes, Delaware, USA
CoordinatesLat. (o)38.7855Long. (o)-75.1045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094578Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0129287_103315021F094578GGAMNNQKERPKWPLQRLKGMYFAMHCWKCKKFELSMEEYKQRCEDNIQKIIDSLEIKEMKFKDFNDIIKNSTFCKFDKRDFSNNCPICKKLGISRRGL*

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