Scaffold Ga0114919_10471690

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10471690
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 868
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030288	Metagenome	186	Y
F083391	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_104716901	F030288	N/A	MTIPLAPVDQEQNERIVWCERLLYLIVLLQFPQLASLA
Ga0114919_104716902	F083391	AGGCGG	MKRTGRRLTLSNDINTLAPPSSIAALGYRLTTIFEDDRENYGWKIVDIKQLFPVVTTDRIEGWALMSVRPSSFFDAGNFGVWASTKQPWDNSLIGTFNKEVAEVYSLRTEHVATNHLSLFYPDNKIPYYNITLEEYLISDEEEIMLKIKETSQSLNDIGE*