Scaffold Ga0114920_10110732

Overview

Basic Information

• Taxon OID: 3300009528
• Scaffold ID: Ga0114920_10110732
• Source Dataset Name: Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1763
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -44.283
  • Long. (^o): -75.865
  • Depth (m): 3285

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F025847	Metagenome	200	Y
F057671	Metagenome / Metatranscriptome	136	Y
F093707	Metagenome	106	N
F099119	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114920_101107322	F057671	N/A	MSITKELDRIAFDVHNEVFEFMYKTVAKELEYSDLEDINDNELHEYIMNQVINRFIQK*
Ga0114920_101107323	F093707	N/A	MIRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0114920_101107326	F025847	AGGA	MDKRINRLFYNFGIATLFFLLGTFYTYYKIDQRLWNETTQKAWDIEARALNFPQKSCYNWQDIELIIFGEIQE*
Ga0114920_101107327	F013818	N/A	MNSVKKYYEMKQDMVDKESLYLCSEIEKALERIISYDDGMLDDKLFTKIKKPAIKLLREWHL*
Ga0114920_101107328	F099119	N/A	MITLLEQLRPEIVEALEKNRDKYDYSITDLYNKLDTSYLYADLSIRDMRDLTLYTDTDYHNWDSMDWRFGTKLLKNNLHE*