Scaffold Ga0115004_10060930

Overview

Basic Information

• Taxon OID: 3300009526
• Scaffold ID: Ga0115004_10060930
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2381
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F066838	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115004_100609302	F002374	N/A	MDQFLLYASVFLASVSFFLCLYACARVGKLLQSVKGLEWDTIATLTGDVGTIKKSIQTLNNRINGLNSPKLNDELLQYAVKQQGNVTNINKNNLGG*
Ga0115004_100609303	F066838	GGAGG	MGQEFFINSQELEDKIRQLLPSQGGAGSSFDLSASTQIVPIIDLTESAEGSGLRADLQTSLSHGSCTELSVQSTTPNFISWTGYW*
Ga0115004_100609304	F001611	AGGA	MPLVQKTITLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTAETVDTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGNYVNNDLLTTGAMRNRVLVRFTNDTAATRTIRCGVFIGG*