Scaffold Ga0116128_1098987

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1098987
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 863
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015444	Metagenome / Metatranscriptome	254	Y
F025429	Metagenome / Metatranscriptome	201	Y
F097686	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_10989871	F097686	AGGAG	MATTVHEPPQIEPRRLPDEGHSGNGGGGNLVPAEGNL
Ga0116128_10989872	F025429	AGGAG	VNFAKQASVRYLKLGLVGLAFLLLISPRDLHAQGCAMCYQSAAASGARLIHALKSGIVVLMIPPLLITGAFARLVYRKRNRFHEEIVEHDEF*
Ga0116128_10989873	F015444	N/A	FEQEGEAVMSSNQEPGMLSYVGIVIGLMIIVWIEVVLTYQHLPVRKLLASLLCLACFEAFVGIMYLMHVKYENPLLFWTIFPATLFVLGMLNYLWPDAHRMARMSLGQ*