NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097686

Metagenome / Metatranscriptome Family F097686

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097686
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 42 residues
Representative Sequence MATTVHEPPKIEPDRLPSQGSGNGGWRNLVPADGDLRRVKDH
Number of Associated Samples 89
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 99.03 %
% of genes near scaffold ends (potentially truncated) 99.04 %
% of genes from short scaffolds (< 2000 bps) 87.50 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.538 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(20.192 % of family members)
Environment Ontology (ENVO) Unclassified
(24.038 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.538 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.29%    β-sheet: 0.00%    Coil/Unstructured: 95.71%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00115COX1 58.65
PF00116COX2 5.77
PF13620CarboxypepD_reg 2.88
PF13442Cytochrome_CBB3 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 5.77
COG4263Nitrous oxide reductaseInorganic ion transport and metabolism [P] 5.77


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.54 %
All OrganismsrootAll Organisms38.46 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908007|FWIRElOz_GKZ9IRQ01AIXUQAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300001100|JGI12703J13194_103291All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300001175|JGI12649J13570_1009464Not Available1171Open in IMG/M
3300001593|JGI12635J15846_10063294All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2764Open in IMG/M
3300001593|JGI12635J15846_10571890All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300001867|JGI12627J18819_10002777All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6423Open in IMG/M
3300002245|JGIcombinedJ26739_100056325All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3591Open in IMG/M
3300002245|JGIcombinedJ26739_100316651Not Available1443Open in IMG/M
3300002245|JGIcombinedJ26739_100832893All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300002245|JGIcombinedJ26739_101109951Not Available678Open in IMG/M
3300003505|JGIcombinedJ51221_10291874Not Available663Open in IMG/M
3300004082|Ga0062384_100938982Not Available614Open in IMG/M
3300004082|Ga0062384_101203535Not Available551Open in IMG/M
3300004091|Ga0062387_100656715Not Available761Open in IMG/M
3300004152|Ga0062386_100137093Not Available1902Open in IMG/M
3300004152|Ga0062386_100504979Not Available982Open in IMG/M
3300005538|Ga0070731_10513235Not Available798Open in IMG/M
3300006176|Ga0070765_102285913Not Available504Open in IMG/M
3300006755|Ga0079222_10791499Not Available772Open in IMG/M
3300006800|Ga0066660_10257015Not Available1370Open in IMG/M
3300006903|Ga0075426_10861480Not Available683Open in IMG/M
3300009518|Ga0116128_1011992All Organisms → cellular organisms → Bacteria3078Open in IMG/M
3300009518|Ga0116128_1098987All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium863Open in IMG/M
3300009552|Ga0116138_1200276All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300009628|Ga0116125_1264440All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300009672|Ga0116215_1375213All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium616Open in IMG/M
3300009698|Ga0116216_10373030Not Available867Open in IMG/M
3300009759|Ga0116101_1077502Not Available749Open in IMG/M
3300009762|Ga0116130_1001571All Organisms → cellular organisms → Bacteria12679Open in IMG/M
3300010339|Ga0074046_10656087Not Available618Open in IMG/M
3300010341|Ga0074045_10340120Not Available979Open in IMG/M
3300011120|Ga0150983_16436275Not Available590Open in IMG/M
3300011271|Ga0137393_10486684Not Available1058Open in IMG/M
3300012208|Ga0137376_11061273Not Available693Open in IMG/M
3300012923|Ga0137359_11591963All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium541Open in IMG/M
3300014155|Ga0181524_10132403Not Available1324Open in IMG/M
3300014169|Ga0181531_10162627Not Available1352Open in IMG/M
3300014169|Ga0181531_10174357Not Available1303Open in IMG/M
3300016341|Ga0182035_11213635All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300017924|Ga0187820_1082900Not Available904Open in IMG/M
3300017936|Ga0187821_10463105All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300017940|Ga0187853_10021676All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis3557Open in IMG/M
3300017942|Ga0187808_10357600All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300018006|Ga0187804_10507025All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300018026|Ga0187857_10434112Not Available591Open in IMG/M
3300018035|Ga0187875_10354814All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300018038|Ga0187855_10635648Not Available622Open in IMG/M
3300018040|Ga0187862_10386147All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300018040|Ga0187862_10526549All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300018057|Ga0187858_10134031Not Available1662Open in IMG/M
3300018090|Ga0187770_10567774Not Available900Open in IMG/M
3300019188|Ga0184599_132279Not Available598Open in IMG/M
3300019240|Ga0181510_1116500All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300020580|Ga0210403_11336783All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300020581|Ga0210399_10249462Not Available1480Open in IMG/M
3300020583|Ga0210401_10110135All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2585Open in IMG/M
3300021180|Ga0210396_11287966Not Available609Open in IMG/M
3300021407|Ga0210383_10461867Not Available1096Open in IMG/M
3300021474|Ga0210390_10275565Not Available1425Open in IMG/M
3300021477|Ga0210398_11441035Not Available537Open in IMG/M
3300021559|Ga0210409_10026745All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5571Open in IMG/M
3300021559|Ga0210409_10231547Not Available1676Open in IMG/M
3300022521|Ga0224541_1007385Not Available1181Open in IMG/M
3300022722|Ga0242657_1034977Not Available1035Open in IMG/M
3300022722|Ga0242657_1203963Not Available548Open in IMG/M
3300022726|Ga0242654_10284260Not Available603Open in IMG/M
3300025404|Ga0208936_1022871Not Available810Open in IMG/M
3300025414|Ga0208935_1031400All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300025434|Ga0208690_1058315All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300025917|Ga0207660_11436934Not Available558Open in IMG/M
3300025932|Ga0207690_10084572All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2224Open in IMG/M
3300026469|Ga0257169_1055426Not Available629Open in IMG/M
3300026482|Ga0257172_1103174Not Available524Open in IMG/M
3300027064|Ga0208724_1020699All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300027297|Ga0208241_1014500Not Available1137Open in IMG/M
3300027439|Ga0209332_1001109All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5888Open in IMG/M
3300027575|Ga0209525_1086498Not Available747Open in IMG/M
3300027605|Ga0209329_1074266Not Available735Open in IMG/M
3300027629|Ga0209422_1025068Not Available1477Open in IMG/M
3300027652|Ga0209007_1015882Not Available1959Open in IMG/M
3300027660|Ga0209736_1068765Not Available985Open in IMG/M
3300027692|Ga0209530_1135481All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300027692|Ga0209530_1135647Not Available692Open in IMG/M
3300027829|Ga0209773_10380561Not Available587Open in IMG/M
3300027879|Ga0209169_10024847All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3207Open in IMG/M
3300027889|Ga0209380_10147994Not Available1372Open in IMG/M
3300028536|Ga0137415_10987072All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300028798|Ga0302222_10443343Not Available508Open in IMG/M
3300028906|Ga0308309_10944077Not Available748Open in IMG/M
3300029943|Ga0311340_10940869All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300029943|Ga0311340_11535102All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
3300029951|Ga0311371_12650693Not Available504Open in IMG/M
3300029992|Ga0302276_10239540Not Available815Open in IMG/M
3300031708|Ga0310686_101979968Not Available915Open in IMG/M
3300031708|Ga0310686_106903792All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300031708|Ga0310686_118165056Not Available592Open in IMG/M
3300031715|Ga0307476_10688751Not Available757Open in IMG/M
3300031820|Ga0307473_10017020All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2853Open in IMG/M
3300031823|Ga0307478_11451927All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium568Open in IMG/M
3300031837|Ga0302315_10471828Not Available686Open in IMG/M
3300031891|Ga0316039_114942All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300032072|Ga0326631_116291Not Available532Open in IMG/M
3300032898|Ga0335072_11555944Not Available561Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil20.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.46%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland8.65%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland7.69%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.77%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.81%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.85%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.85%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.88%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.88%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.96%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.96%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.96%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.96%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908007Soil microbial communities from sample at FACE Site Metagenome WIR_ElevOz2EnvironmentalOpen in IMG/M
3300001100Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1EnvironmentalOpen in IMG/M
3300001175Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009552Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150EnvironmentalOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019188Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019240Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022521Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025404Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025414Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025434Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026469Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-BEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300027064Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)EnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029992Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031891Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032072Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FWIRElOz_097064502124908007SoilMATTVHEPPKVDLRRQRESGNGGWRNLVPADGDPRVVQD
JGI12703J13194_10329113300001100Forest SoilMATTVHEPPQIDPSRLPDRKHSGNGWKNIVPENGSSRVALDYS
JGI12649J13570_100946413300001175Forest SoilMATTVHEPPRIEPERLAGPGSGNGGGRDLVPNNGELRQVKDYSPP
JGI12635J15846_1006329413300001593Forest SoilMATTVHEPPKNELDRLPSQGSGNGGWRNLVPADGDPR
JGI12635J15846_1057189023300001593Forest SoilMATTVHEPPKIEPDRLPSQGSGNGGWRNLVPADGD
JGI12627J18819_1000277763300001867Forest SoilMATTVHEPPKVEERRDQSRPARNSGNGWRNLVPSE
JGIcombinedJ26739_10005632513300002245Forest SoilMATTVHEPPKIEPRRQRDSGNGGWRNLVPAAEDRR
JGIcombinedJ26739_10031665113300002245Forest SoilMATTVHEPPKIEERRPGVSGNGGWRNLVPADGDPRVVQDYSPPPASTG
JGIcombinedJ26739_10083289323300002245Forest SoilMATTVHEPPKIEPHRLPYQRHSGNGGWRNLVPSDGDLRVALDY
JGIcombinedJ26739_10110995123300002245Forest SoilMASTVHEPPQIGERRSPDLKQSGNGGWRNLVPANGDLRVL
JGIcombinedJ51221_1029187423300003505Forest SoilMATTIHEPPKIELDHLPSQGSGNGGGQNLAPTNGDLRRVKDSS
Ga0062384_10093898223300004082Bog Forest SoilMATTIPEPARIDPRRPDQRHTGNGGWRSLVPADGDLRVTEDYAPP
Ga0062384_10120353513300004082Bog Forest SoilMATTVHEPPKIDLNRLPSQGSGNGGWRNLVPTDGDLRQVKDSSP
Ga0062387_10065671513300004091Bog Forest SoilMATTVHEPPKIEIDRLPSQGSGNGGWRNLPADGDLRRVKDSSPPPAS
Ga0062386_10013709313300004152Bog Forest SoilMATTIPEPPKIELERPTSHGSGDGGWRNLPPGGELRRTKDNSPPPAS
Ga0062386_10050497913300004152Bog Forest SoilMATTIHEPPQIDPRRAPEPGHSGNGGWRNLVPAGGDLRVTLDYS
Ga0070731_1051323523300005538Surface SoilMASTVHEPPQIDKQRLPDLKPSGNGGWRNLVPANG
Ga0070765_10228591323300006176SoilMATTVHEPPKIEPERLPSQGSGNGGWRNLGPADGDLRRVQSYSPP
Ga0079222_1079149913300006755Agricultural SoilMATTIHEPPKIEPRPQRDNGNGGWRNLVPADGDRRMVQDYSPPPAST
Ga0066660_1025701513300006800SoilMATTVHEPPQIDPNRLPERAHSGNGGGKNIVPAGGD
Ga0075426_1086148013300006903Populus RhizosphereMATTIHEPPKIEPRPQRDNGNGGWRNLVPADGDRRMVQD
Ga0116128_101199243300009518PeatlandMATTVHEPPKIDLDRLPSQGSGNGGGRNPVPAGGD
Ga0116128_109898713300009518PeatlandMATTVHEPPQIEPRRLPDEGHSGNGGGGNLVPAEGNL
Ga0116222_126360013300009521Peatlands SoilMATTVHEPPQIEPRRLPDDGRSGNGGERNLVPAEGNLR
Ga0116138_120027613300009552PeatlandMATTIPEPPKIELDRLPSQGSGNGGRRNLGPAGGDLRRVQNSSPAP
Ga0116125_126444013300009628PeatlandMATTTHEPPKIDLERLPSQGSGNGGWRNLVPADGDLRRVKNSS
Ga0116215_137521323300009672Peatlands SoilMATVHEPPQIDLRRLPEPGHSGNGGWRNMVPADGNLRVTLDYSP
Ga0116216_1037303023300009698Peatlands SoilMGWEKFMATTVHEPPKIDERRDPSQLRIDSGKGGWR
Ga0116101_107750213300009759PeatlandMATTVHEPPKIEPERVPSQGSGNGGWRNLAPADGALRRV
Ga0116130_100157113300009762PeatlandMATTVHEPPKIDLDRLPSQGSGNGGGRNPVPAGGDLRRIKPSSPPPA
Ga0074046_1065608723300010339Bog Forest SoilMATTIPEPPKIEFDRLPSQGSGNGGGRNLVPASGDLRRVKDSSPPPAS
Ga0074045_1034012023300010341Bog Forest SoilMATTVHEPPKIDSHRLPDQRHSSNGDWRNLVPADGDLRVTQDY
Ga0150983_1643627513300011120Forest SoilMATTVHEPPKIEGRRPSVSGNGGCRNLVPADGNPRAVQDYSPPPASTG
Ga0137393_1048668413300011271Vadose Zone SoilMATTVHEPPKIEKERLQSQGSGNGGWRNLVSASGDLRRIKDPSPPPASTGI
Ga0137376_1106127323300012208Vadose Zone SoilMATIIPEPPKIDPHRSPDQGHSGNGGWRNLVPGDGDLLVALEYSPP
Ga0137359_1159196323300012923Vadose Zone SoilMATTVHEPPKIDPHRLPEQARSGNGGWRNLVPSDGELRVTQEYSP
Ga0181524_1013240323300014155BogMATTIHQPPQIDPRRLPDQGQSGDGGWRSLVPADGDLRVALD
Ga0181531_1016262713300014169BogMATTVHEPPKIDLDRVPSQGSGNGGWRNLGPAGGDLRRVKPSSPPPASTG
Ga0181531_1017435713300014169BogMATTVHEPPKVEQTKIDQTKIDKEKIGQERLPSQGSGNGGWRNLVPADGDLRRVKSYSPPPA
Ga0182035_1121363523300016341SoilMATTVHEPPRIEEIRDPSRLRSSSDNGGWRNLVPSDG
Ga0187820_108290013300017924Freshwater SedimentMATTVHEPPKIEERRDPARLTSNSGNGGWRNLVPADGDV
Ga0187821_1046310513300017936Freshwater SedimentMATTIQQPTKIAPERLPSQGSGNGGWRNLVPAGGDLRRVKNYSPP
Ga0187853_1002167613300017940PeatlandMATTVHEPPKIDLDRLPSQGSGNGGWRNLVPSGGD
Ga0187808_1035760013300017942Freshwater SedimentMATTVHEPPQIDPRRLPEPKHSGNGGWRNLVPADGDLRVVQHY
Ga0187804_1050702523300018006Freshwater SedimentMATTVHEPPKIEIDRLPSQGSGNGGWRNLVPAGGDLRRVKDSSPP
Ga0187857_1043411213300018026PeatlandMATTIPEPPKIELDRLPSQGSGNGGRRNLGPAGGDL
Ga0187875_1035481413300018035PeatlandMATTIHQPPQIDPRRLPDQGQSGNGGWRNLVPADGDL
Ga0187855_1063564813300018038PeatlandMATTVHEPPKIEPERLPSQGSGNGGWRNLVPTDGDLRRVKSYSPP
Ga0187862_1038614713300018040PeatlandMATTIHQPPQIDPRRLPDQGQSGNGGWRNLVPADGDLRVALDYSPPP
Ga0187862_1052654913300018040PeatlandMATTVPEPPKIDLERLPSDGSGKGGWGNLVPAGGELRRVK
Ga0187858_1013403123300018057PeatlandMATTIHQPPQIDPQSLLDQGRSGNGGWRNLVPADGDLRVALD
Ga0187770_1056777413300018090Tropical PeatlandMATTVHEPPKFEHDVVPSRGSGSGGWRNLAPADGDLRR
Ga0184599_13227923300019188SoilMATTVHEPPRIDPDRLPAKGHTGNGGRGNFVPADGDLHVT
Ga0181510_111650023300019240PeatlandMATTVHEPPKIEPGPLPSHGSGDGGWRNLVPADGDLRQVRNASPPPAS
Ga0210403_1133678323300020580SoilMATTIHEPPKIDLDRLPSQGSGNGGWRTLVPLDGDLRLAK
Ga0210399_1024946213300020581SoilMATTVHEPPQIDRRRSPETSHSGNGGWRNLAPANGDLKAV
Ga0210401_1011013513300020583SoilMATTIHEPPKIDLDRLPGHGSGNGGWRNLVPADGDVR
Ga0210396_1128796613300021180SoilMASTVHEPPQIDKQRLPDLKQSGNGGWRNLVPANG
Ga0210383_1046186713300021407SoilMATTIPEPPKIEQDRLPSQGSGGGWRNVVPASGDLR
Ga0210390_1027556513300021474SoilMATTVHEPAKIDLERLPNQGAGNGGWRNLAPAGGDLRRVKDSSPPPA
Ga0210398_1144103513300021477SoilMATTVHEPPKIDLDRLPSQGSGNGGWRNLVPPDGDLRQVKNSSPPP
Ga0210409_1002674563300021559SoilMATTIHEPPKIDLDRLPGHGSGNGGWRNLVPSDGDVRLVKDS
Ga0210409_1023154713300021559SoilMATTVHEPPRIDPDRLPEKGHTGNGGWGNFVPTDGDLRVTLE
Ga0224541_100738513300022521SoilMATTVHEPPKIEPRRLPIEGSGNGGWRNLVPAGGDPRRVKDSSPPPAS
Ga0242657_103497713300022722SoilMATTVHEPPKIEDRRDPWLKNSSGNGGGRNLVPADG
Ga0242657_120396323300022722SoilMATTVHEPPKIEERRPGVSGNGGWRNLVPADGDPRVVQDYSPPP
Ga0242654_1028426013300022726SoilMATTVHEPPKTDPRRLPDQGRPGNGGWRNLVPADGDLRGTQEY
Ga0208936_102287113300025404PeatlandMATTVHEPPKIDLDRLPSQGSGNGGGRNPVPAGGDLR
Ga0208935_103140023300025414PeatlandMATTVHEPPKIDLDRLPSQGSGNGGWRNLVPAGGDLRRVKASSP
Ga0208690_105831513300025434PeatlandMATTTHEPPKIDLERLPSQGSGNGGWRNLVPADGDLRR
Ga0207660_1143693423300025917Corn RhizosphereMATTIHEPPKIEPRPQRDNGNGGWRNLVPADGDRR
Ga0207690_1008457213300025932Corn RhizosphereMATTIHEPPTIEPRPQRDNGNGGWRNLVPADGDRRMVQDY
Ga0257169_105542613300026469SoilMATTVHEPPKIDPRRLPDQGHSGNGGWRNLVPADGDLRVTQEYSPPPSST
Ga0257172_110317413300026482SoilMATTLHEPPKIDPRRLPDQGHSGNGGWRNLAPADGDLRGT
Ga0208724_102069913300027064Forest SoilMATTVHEPPKIDLDRLPSQGSGNGGWRNLVPSDGDLRQV
Ga0208241_101450013300027297Forest SoilMATTVHEPPKIEIDRLPGQGSGNGGWRNPVSTDGDLRRVKDS
Ga0209332_100110913300027439Forest SoilMVTTIHEPPTIELDRLPSHGSHNGGWRNLVPADGDLRRVK
Ga0209525_108649823300027575Forest SoilMATTVHEPPKIEPERLPSQGSGNGGWRNLGPADGDLRRVQSYSPPPASTGV
Ga0209329_107426623300027605Forest SoilMATTVHEPPKIEPDRLPSQGSGNGGWRNLVPADGDLRRVKDH
Ga0209422_102506823300027629Forest SoilMATTVHEPPKIEPDRLPSQGSGNGGWRNLVPADGDLHRVKD
Ga0209007_101588223300027652Forest SoilMATTIQPPSQSESDRFPSQGSGHGGGRNLVPADGDMPSVKN
Ga0209736_106876513300027660Forest SoilMATTVHEPPQIDSHRLPETSHSGNGGWRNLVPADGDLRLAQHY
Ga0209530_113548123300027692Forest SoilMATTVHEPPKIERFPSHNSGNGGWRNLAPASGELRRVKDPSPAP
Ga0209530_113564713300027692Forest SoilMATTVHEPLKREIGRSLSQGSGNGGWRNLVPADGDVRRVKEYSPPPASTGIW
Ga0209773_1038056123300027829Bog Forest SoilMGTTVHEPPKIDQRRGPDDAHSGNGGWRNLVPADGNLR
Ga0209169_1002484743300027879SoilMATTVHEPVKREIGRSLRQGSGNGGWRNLVPADGDVRRVKEYSP
Ga0209380_1014799423300027889SoilMATTVHEPPKIDLDRLPSQGSGNGGWRNLTPAGGDLR
Ga0137415_1098707213300028536Vadose Zone SoilMATTVHEPPKIEPRRSPNEGSGNGGWRNLVPAGADARKLAD
Ga0302222_1044334313300028798PalsaMATTVHEPPKIEPERVPSQGSGNGGWRNLAPADGALRRVQ
Ga0308309_1094407713300028906SoilMATTVHEPPKIEIDRLPSHGSSNGGWHNLVPVDGDLRRVKDSSP
Ga0311340_1094086913300029943PalsaMATTIHEPPTIDRERLPSQGSGNGGWRNLAPASGDLRRVKDSSPP
Ga0311340_1153510223300029943PalsaMATTVHEPPQIDSDRLEDSGNGGWRNLIPANGDLRITADY
Ga0311371_1265069313300029951PalsaMATTVHEPPKIEPERVPSQGSGNGGWRNLAPADGALRRVQSYS
Ga0302276_1023954023300029992BogMATTVHEPPIEQTKIEQERSLSQGSGNGGWRNLAPAGGDMRRVKD
Ga0310686_10197996823300031708SoilMATTINEPPQIDPDRLPDHGHAGKGGWGNLVPVDGDLRVTQ
Ga0310686_10690379223300031708SoilMATTVHEPPRIEEPRDPRLGGTSGNGGRNLVPANG
Ga0310686_11816505623300031708SoilMATTVQQPPTIEQDRLPSQGSGNGGWRNLAPGGGDQRRVKDSSPPPASTG
Ga0307476_1068875123300031715Hardwood Forest SoilMATTIQQPPKIEHEHLPSQGSGNGGWRNLVPAGRDPRKVKSFSPPPAS
Ga0307473_1001702033300031820Hardwood Forest SoilMATTVHEPPKIEKIREPRSGSGNGGWRNLVPAGELRSVQEYAPPPA
Ga0307478_1145192723300031823Hardwood Forest SoilMATTVHEPPKIDLELLPSQGSGGGGWGTMVPAGGDLRRVKNS
Ga0302315_1047182813300031837PalsaMATTVHEPPKIEPRRLPIEGSGNGGWRNLVPAGGDPRRVKDSSPP
Ga0316039_11494223300031891SoilMATTVHEPPKIDLDRSPSQGSGNGGSRNLVPAGGDLRRVKDY
Ga0326631_11629123300032072SoilMATTIHEPPKIELDRLPSHGNGDWRNLPPANGDLRRIKDSS
Ga0335072_1155594413300032898SoilMATTVHEPPKIETDRLPSQGSGDGGWRNLVPADGDLR


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