NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129284_10245869

Scaffold Ga0129284_10245869


Overview

Basic Information
Taxon OID3300009514 Open in IMG/M
Scaffold IDGa0129284_10245869 Open in IMG/M
Source Dataset NameMicrobial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1W
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Delaware
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location
Location NameCape Shores, Lewes, Delaware, USA
CoordinatesLat. (o)38.7855Long. (o)-75.1045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090867Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0129284_102458692F090867GGAMHGQGGGFMNFNDGMEKKVRKLLDHTGMTNTEIAEAVGVHRQDIERFKRRRNEPTSLSDEELACTQTTDGFMSYLGGGRID*

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