Scaffold Ga0115003_10180869

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10180869
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N
F086834	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_101808693	F082713	N/A	MKIKGLTEQDCAFVYYVLRDWSQNHENYEEQDVDNVYEIAKKFKTY*
Ga0115003_101808694	F005817	N/A	MRSNLLTRLKSEYKRGLEDNKLRYPAMISDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNVA*
Ga0115003_101808695	F086834	N/A	MVMCEWTLADIKNRASNKAFAKVTILALDIETYKQDLREGNIGGVTYDEFKQ