Basic Information | |
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Taxon OID | 3300009510 Open in IMG/M |
Scaffold ID | Ga0116230_10020014 Open in IMG/M |
Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6519 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003475 | Metagenome | 484 | Y |
F020482 | Metagenome | 223 | Y |
F057064 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116230_100200145 | F020482 | GGA | MEKTLPDKGILEKLTRKGKILAFYIIINKVETLNKP* |
Ga0116230_100200146 | F057064 | AGGA | MQERISKDLPHGNKENWDMALLYIAMGYMMSKHASLPHFNPYFLFSRKHPIPPSSIATQMDQFMDLNSLAIWARVIVERSALFRRVMPMAMENLSIAQH* |
Ga0116230_100200147 | F003475 | AGG | MGNTFPKLHQIIGIAYNNGPNATHGRIITSSDVYHKAIEWFLHHMNGLVLFRRYIQSLDTLELSVFIAFSLLITIGEVCMFKFEMSLLNVNNMIE* |
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