NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115567_10384766

Scaffold Ga0115567_10384766


Overview

Basic Information
Taxon OID3300009508 Open in IMG/M
Scaffold IDGa0115567_10384766 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120412
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046640Metagenome151Y
F060341Metagenome133Y
F086180Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0115567_103847663F086180GGAGGMKVGDLVRVLVGEHKEDFPLGMVIGFDEDDDPIVIERGQKLPHYRSHLEVIHESKSR*
Ga0115567_103847665F060341AGGCGGMKVGDLVKFKSSASKGGRSLSIGLVIETGVYVGNTDVKICWDGKGIYTEYSKTLEVISETR*
Ga0115567_103847666F046640N/ALLKDGTWYPALGVFMGYQGRKDGYTSHSYVYADGRNLRFESWDVKAVK*

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