Scaffold Ga0115572

Basic Information
Taxon OID	3300009507 Open in IMG/M
Scaffold ID	Ga0115572_10013997 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009507 Open in IMG/M

Scaffold ID

Ga0115572_10013997 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5763
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5763

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F037230	Metagenome / Metatranscriptome	168	Y
F045851	Metagenome / Metatranscriptome	152	Y
F046001	Metagenome / Metatranscriptome	152	N
F056896	Metagenome / Metatranscriptome	137	N
F072257	Metagenome / Metatranscriptome	121	Y
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_1001399710	F037230	N/A	MKNLTEEYVEIDWTGICSDFDLDHGDITPEQSFEMDRALGNINEVLHKFIEQNKSEVHLGQATLTNTEYNVLMVSLDHMYEHLDDMRGDFDGDEDNEIDNLKRIADVRSLQKLFKK*
Ga0115572_1001399713	F092077	N/A	MKELSPLQRSFERINELMPDNKDVLLRCSLYEMCFELTNQSFAEGINTKY*
Ga0115572_1001399714	F072257	N/A	MQELDKVVHQWCDSNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDRGLTDFYKQMLYTFAYEQRTTSEHQFINKCMWAYHSAISSRDEYAEEKTTHDYLKMCRQKTTTIR*
Ga0115572_1001399715	F005129	N/A	MKYKVKIAEVNKSTNLMHHSYIDLGIFTVNATTHSFLFPAVKTDWGADINDTELEFHVNNKRCKYVGFKELYTQLYGNSFVTWEADIIQQIEEEVAKQIVKEYPGTNVNY*
Ga0115572_100139972	F046001	N/A	MTKIQFNTNYKTINQITNSNKLNRPVHIMSDGLYVDNSDLETVGKILDRELIKYKLK*
Ga0115572_100139973	F045851	N/A	MTLQDHNTINELIKFYQKNRNESDYKKGIQPIDGHKIDKLMMSNHLMGAKLDLNIY*
Ga0115572_100139979	F056896	N/A	MWSNCCGAEASYLSDELCGDCLEHAVFDDEDEDMGDTCRNGKEWNKCKCC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115572_10013997

Overview

Ecosystem & Geography

Associated Families

Sequences