Scaffold Ga0114951_10036661

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10036661
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3073
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038050	Metagenome	166	Y
F050095	Metagenome	145	N
F091308	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1003666110	F050095	GGAGG	MMDWIDIIVGGIVAIFIVGGCLALYADATSHPWED
Ga0114951_100366618	F091308	AGGA	MRYEQARPLVNTLMEIAVLNHASPSLLREKIYKALDEFLPDMDEGCRERGCIAVDDFKEKAVLGGEKKQEKA*
Ga0114951_100366619	F038050	AGGAG	MKKYFATIGFFMTPFIISYAFWYVIGAGISASWDTANWTMNLKIVLTVWAGCFAAMMLFKLERGGK*