NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114951_10007402

Scaffold Ga0114951_10007402


Overview

Basic Information
Taxon OID3300009502 Open in IMG/M
Scaffold IDGa0114951_10007402 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9336
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.2Long. (o)25.1Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016642Metagenome245N
F033624Metagenome / Metatranscriptome177Y
F034036Metagenome175N
F091214Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114951_1000740210F016642GGAGLSKIIELSKDEVRICTNLATERWLTKFGSVDRPNYAEGKAAGRLEHELLANVRANISEWAAAKSYNQTWSVPWYPNELHPERKNLADVGNNYEIRTVRTRTAIPFWDKDINKIIIGTKILDEEYYSQVEVYGSFHPLECMLDKYRDETIMGWRVPVTELQYE*
Ga0114951_100074022F091214AGGAGMKRKPWVKPKELSLEDLAWAMFEKTTFLEAQEFAYELGYEIVIRWDK*
Ga0114951_100074024F033624N/AMIEIKMSHGDLSFATIEAVARFNYNRAKGNEDPRGHAPTWVEQVAREISGCLGEIAIARWQDKYPFALFEERKMGDVGEFEVRTTAYATGKLLINSSDDPSRKYLLVTLPTHYLACIHGWMYGYEAQTEKFYNTTMRTPVFAVQQQYLNPPETIHG*
Ga0114951_100074027F034036N/AMTTIAAIEGPDWVMIGADSQSSSEDGFSINIPNGKVFKNNNLVFAMAGSVRGINILEHDFVPPVVNGKDIDKYVTRQLIPSIRKSFLEAGYEFSKADSAVEHDNIIIVAVKGRVYCINEDYSWERNADNLYVAGSGEKFALGAMTALGGGVMIDDPIKARKILTKALQIASKYDSFTGGKITINLIQEDK*
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