NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115570_10265846

Scaffold Ga0115570_10265846


Overview

Basic Information
Taxon OID3300009496 Open in IMG/M
Scaffold IDGa0115570_10265846 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000711Metagenome / Metatranscriptome925Y
F099541Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0115570_102658461F099541N/AMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKN
Ga0115570_102658462F000711N/APQGLINISMETLNQPTHPTDYRLAKLMDGSLLMGTISVDDEHMRIINPLELVTIPRMTNEGLKEDTTLSKWIPFTDDIEFVIAKDKVVVITLASVDLAHYYEVVLEKIETSDAKIRPALSADDIDRILEIAEEDDEELLEWDEEATNVIGGHVIDSKKLH*

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