Scaffold Ga0115571_1009434

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1009434
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5467
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065486	Metagenome / Metatranscriptome	127	N
F069778	Metagenome / Metatranscriptome	123	N
F078233	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_10094342	F078233	AGCAG	MKVNQEEKEFITFSKAARLLGYTSSQIINRLIDEKHLKAYSFPDSSTRKVCRHEVLSLIHLSVSKDSVDSE*
Ga0115571_10094343	F065486	GAG	MKDDLSDFRMLRDENLLDRYVSLTKAATILGYTSYVSVNALIQNKKIRPYWLPGNSKKKILLSDLHKLLEEARSRPAPKKRGKGRPSII*
Ga0115571_10094346	F069778	N/A	MEKIFISCQEAKRILGYKNHNSINYLVQKNQLDEYMIGPLKRKLYSLQEVRALQEIKKGSNNSVNP*