Scaffold Ga0115554_1345693

Overview

Basic Information

• Taxon OID: 3300009472
• Scaffold ID: Ga0115554_1345693
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 585
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F064688	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115554_13456931	F064688	GGAG	VTENLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHNELSVGDL
Ga0115554_13456932	F009460	AGGAG	MAKWDLTKLENSASVGAHIDEDSSTPTQPTPQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLERRL*
Ga0115554_13456933	F005843	N/A	FVIFSSLDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENNNG*