Scaffold Ga0127391_1000012

Overview

Basic Information

• Taxon OID: 3300009450
• Scaffold ID: Ga0127391_1000012
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31829
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (36.73%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004278	Metagenome	445	Y
F008128	Metagenome / Metatranscriptome	338	Y
F009805	Metagenome / Metatranscriptome	312	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F041147	Metagenome / Metatranscriptome	160	Y
F090274	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127391_100001210	F025982	N/A	MNCHEHAIKDFDLQLEMNVLQMDMLMEEGKVLDYHMADFEDLEQKKLKLLIGKRFHQNACNAYWYWAQREKSGK*
Ga0127391_100001212	F008128	N/A	MEPVYVPKLTVSFAVDLEVEYNSFGGKTAEEIAEALQDDLDDLLFELGGVTGIYTSCTLINSND*
Ga0127391_100001214	F041147	N/A	MDTTNEPIEAISAWQEWYKRNKVVAELDEPLVTKDSRECLHDTTHVISSCGNLMTDYVKGVSFQKAKEYFADTLAEFANELSGKELYKAFYAAAVDNMECVEKEYKNAKQIVDMLRDTNV
Ga0127391_100001228	F004278	N/A	MIQTLFNDIIQAIIKWWKKTWFEAKLTARLKMIEWENQWEAERELQEQNRPIYYEQEIDPQLQTGESKKLGGAMGLRAPWYTDGLQPPESDGVSQASSMDDSL*
Ga0127391_100001229	F009805	GAG	MDIHVIGVGEWMNSLMSRMNSAMDGDCFYLPTLMHLHAYNLLKEGSFPNKDFKVEIKNPAEV*
Ga0127391_100001237	F090274	N/A	MGSENIEIATTQKDWDDFFAGWDNPQDAIDSLDSYGERVRVACELSGRKIKEAIKRLDEPKKEKVRITIEFEFDR*
Ga0127391_100001243	F002876	N/A	MACKKSDLISAINSFGSARATGDGNLIGYSANLIGQLIETLTFEPEETPGTEETEIEE*
Ga0127391_10000125	F002333	N/A	MTETLLELNAAQASIYTRTNLCRAFQDFDDTEIAGIYLRDADCIVVRRDGSQQAFPRDLIKQSFVSYTHRLKDFFSYLGPNYRGPSVWHNNAYIMFKGWHYSHALGHLTSNAKLQQHWADKFIHLSDPAKVTTLLQSDQTDIGHLVAPDGMRLPDRAIDMESELDSNTDQKPMLGEPCCSCGSFQRQLSNLSAFQGEIEGFRPWCIHLTWFNKYRELLCKRTEVRNASPSGTPEKCVAWWYAPPNDSTSDGRFVLLHTKYGAQAPLSHWRTYMPKEVFTQHHAWDLFFSMMAADYVPFPGVSLPQLKAAIKKP*
Ga0127391_10000126	F038646	N/A	MIDQDYILDYARQLVANQPMKPTENHNYHLDIPNDLHWELVKLGAELKMDYEVYAEEVLRIHAEDAISKRIVAKAYNDTSWVYKLNFDCVEEEDGSMIINIEWDEKDPDLQYWTNLGPKGQENFVLTALRSACDSALSDHDN*
Ga0127391_10000127	F002738	N/A	MTIDTYGLTSDQYEEFFENNIRFAAKLYLKANTIIVDEGVTHADFKTLLDLYQEAVYATNDDCRRYQKSNNPEALKEATADLFGITPTREELMEEIQSVSAKVEALTDYISNLVTITTSGLEGIATTLDKPVD*
Ga0127391_10000128	F013517	N/A	MFETLLAAVLPVMKDLLWATAGILLTYILNKIQSQFN*
Ga0127391_10000129	F001018	N/A	MTQITQAKLKELSIIKLYEHYRALEQSLPLLTPESQELAQAELETCANLRSEKVDRIHYAMAAHEDALERIKKEGDLITQAKRHHESQLKSLKGLLNYLRRVLPVDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCIAEEVTTTKRVVLRSMSGDILDERIEPKTTTKILPNLDAIRSAYQEGQHLPNGVKVQQEYSVRSKRIFSEPRMELASSEYPAELLREDSSAD*