NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115008_10831774

Scaffold Ga0115008_10831774


Overview

Basic Information
Taxon OID3300009436 Open in IMG/M
Scaffold IDGa0115008_10831774 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → unclassified Cellvibrionales → Cellvibrionales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054345Metagenome / Metatranscriptome140Y
F059341Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0115008_108317741F059341AGGLAVKPDPSAAQKKYPLYRLAINPLKLLDRKPYEMHPSCSSFAVKVAAFFGYF
Ga0115008_108317742F054345N/ARHASHFS*FASLTLRDALQARSKKRCVCAKKSNQKKAHNLTKIDPDITYVLWDFLNQYI*TLPTKTFFTRPNCSSISELASSQYLCVAADFSKHNEATTNKFSRLLFILEHVKTVPNGRFLLLSSACRSKKIEKKRRSEAQKNY*A*

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