Scaffold Ga0115008_10122540

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10122540
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042800	Metagenome	157	Y
F068853	Metagenome	124	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_101225401	F068853	N/A	MSLQKYNKSQLAILRAVKDDLKHHLGKEINHDPEGDAEALTELETRLADWLTVGGGGAWLRSLPEVDKNLTK*
Ga0115008_101225402	F042800	N/A	MNQTKIHLYKNTPFGIERVNEKALTVTEARALIRSNPNLTARDAESASYEVLHMPIDWQDEEPTRQELAIASNLSLGLKIAACISVALFIAQKLLP*
Ga0115008_101225403	F085723	N/A	MLTRIKFSAQHPTLNAMQLQAAYQLSEIDGWHVNGKTAYKEGVTLQLLENGNALK*