Scaffold Ga0115546_1093075

Overview

Basic Information

• Taxon OID: 3300009435
• Scaffold ID: Ga0115546_1093075
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042800	Metagenome	157	Y
F068853	Metagenome	124	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115546_10930751	F085723	N/A	MLTKIKFNLLHPTLNAMQQQAAYQLSEIEGWHVEGKTAFKDGLTLYLHENGNALCKPLGGF*
Ga0115546_10930752	F042800	N/A	MKLHAYKSTPFGLERVNDHPLTIAEAKAILRVNPSLTVRDAQSASYEVLHMPTDWQEEEPTAQEMAIARNFKAGVIIALVVSAALFIAEILTR*
Ga0115546_10930753	F068853	N/A	MTLRTYNKSQLAILCTVKDELKYYLGEEINHNPEGDPGALTELETRLANWLTVGGGGAWLRSLPEVQEEFTK*