Scaffold Ga0115545_1010256

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1010256
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4126
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017486	Metagenome / Metatranscriptome	240	N
F055202	Metagenome / Metatranscriptome	139	Y
F060810	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10102561	F055202	N/A	RSSIMTRRQAKQIRRQVKAILIQVSLGLAAGLIIGAVLALNL*
Ga0115545_101025611	F017486	AGGA	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRPNEIVQITSMEHLNEWYEGLSEAPEDEVCEKAIIDNSQTLNNEALDANLLDFILAAGGYHTTAELADYFELDHKTAGNA
Ga0115545_10102568	F060810	GGAGG	MSIRVGLPDVTFNALCRITEIDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVIDGLDLDGDTGIHRSIISIVLDKEEQGL*