NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120401_1343359

Scaffold Ga0120401_1343359


Overview

Basic Information
Taxon OID3300009431 Open in IMG/M
Scaffold IDGa0120401_1343359 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0137033, Gp0137034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080045Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0120401_13433591F080045N/AFMSCGVTIPTKPKDLQMAQKLPKNPNIARKVREGIAGGVSVQQIFKSVLHMKNAPQSYTTFYKLYREDMDEVKFSIDAEVGKTVIQQAREGDFKSQELYLRSRAGWSPSSHVQEQEVGTEDEENEGAVNALMAALGKDTDTEE*
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