Scaffold Ga0114915_1071542

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1071542
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1075
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10715422	F092711	AGGAG	MVQLEITLTGRSKSFTGDTLQDCAKQFFDEFGEASKEVVKCHTFEVNNPTEFLIVGGNESCIGYLKQMQQGAIDDK*
Ga0114915_10715423	F020603	AGGAG	MINKLLLIIFCSLLVANCSTYKPLINPETSKDKHNGNVIAGNYWKDLQACNYIYTENTGILADKLGMADKKGFINKCMNDYGYSILR*
Ga0114915_10715424	F028622	N/A	MKDEDKTFENEVSPIVKDDRGSLDLTRQIDDLNIKVKNLDGLEKLHKETNGDLRVHNLKLDREIYQLKKDMAMQNETHQMDIIQKDNEIGRLIKKITEK*