Scaffold Ga0114915_1016686

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1016686
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2691
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F090883	Metagenome / Metatranscriptome	108	Y
F092702	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10166863	F004988	AGG	VPKLVETICPRCDGNGYIRIIPVVATVGDTGTEADCPMCEEEFIHMGMKVTAHNGYVLLPIKDTRKNIEGGRESKTKWSGETLPEVGK*
Ga0114915_10166865	F090883	N/A	MEADIMTIALKMRRINNCRDMLTQAQCPRMQAMWKRNYEKLLKNYWEEQGERILRAAGEIH*
Ga0114915_10166866	F092702	N/A	MVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHENDFK*
Ga0114915_10166867	F000720	GAGG	MILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFNKNIEDIITGVPIDKKQRMLSTDPYASQMKE*