Scaffold Ga0114915_1000516

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1000516
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17621
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (2.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F071260	Metagenome / Metatranscriptome	122	Y
F085894	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100051610	F085894	N/A	MTENQVTEVLNKLNLVLEDFQMLRDGTWVPDKKSCNDSIDNIESIIYIIDNG*
Ga0114915_100051611	F002047	N/A	MSKQDVLDLIDEEYLEKKDSKFVLTSKAKLFIVRMDNYFIKAKKKTDIALMGKNSIDNINTYREIFPAKKLPSGKPARNNVKALSDAFRWFFETYDHTWDDVIKATRMYVNEYRDKEYMYMQTSQYFICKQDKHRVKHSTLADYCDMSIEGISTEDEHFKENVV*
Ga0114915_100051633	F071260	N/A	MFFEDAQYAWELYKISPELTCTCDEVHTCQQCHEET*