Scaffold Ga0114997_10015280

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10015280
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5337
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019030	Metagenome	232	Y
F081754	Metagenome / Metatranscriptome	114	N
F096074	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1001528012	F019030	GGAG	MSKEDIDSRKTYAVQRSTLEAIGIELVIAQREYEKQLNMHTHLITGECELPEADKVFYEEQVGYLNGLLMHLHEATNNELLLI*
Ga0114997_100152805	F096074	GAG	MKKLLGINSTVMNGIEKTTVTKITSKGVTLTGKKGKQSLTFPLKDVEKALDTGKWKVIK*
Ga0114997_100152809	F081754	GGA	MAGRKATTQYGNPVTVLSWYLLPNGWEVWQLEDADPNGIFYSYVEGDESEFGLSSLKELESIETFYSEGEQLQNLDPPAGWEWEKEISEFESFALAIE*