Scaffold Ga0114994_10156101

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10156101
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1545
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101561012	F000720	GAGG	MAMILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKELADTLSQDNIIGQMVNYFTKNVEDIIMGVPIDKKQRMLSTDPYASQMKE*
Ga0114994_101561013	F090883	GGAGG	MVTIAIRMKRINNCRDMLSKATCSRMRKMWKRNYEKLLKEYWEEEGERILNAAGQVH*
Ga0114994_101561015	F004988	N/A	MERERLVKTICPRCNGNGYIRVSPVIAGVFDKATETDCPMCENQFDHIGMRMSTHNGYVMLPLDQTRLNIEGGRESKVKWSGETLPEVGKE*