Scaffold Ga0114994_10014210

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10014210
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5635
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F011704	Metagenome / Metatranscriptome	288	Y
F014792	Metagenome	260	Y
F015261	Metagenome / Metatranscriptome	256	Y
F024333	Metagenome / Metatranscriptome	206	Y
F096067	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1001421010	F096067	GAG	MSEDINVQIYINKKEILYSHQNIVSVINTFLPYLTNPDLDELRNTCDTLLEHRHQQEKLSIEERKHIPIQSNRHDT*
Ga0114994_1001421013	F011704	N/A	MNIDNFQELIDLTDYLATSNEYLIRKFTEGGNYLIIDTYGDFLIIERDEVDTVFSTIWNDLYGPISEEIPHILN*
Ga0114994_1001421016	F015261	AGGAG	MPVNIIWEDGDATVSILCDGCDKEYEILTNDTDGLELCSFCGHYLEVESETGETNESEEDSWN*
Ga0114994_1001421017	F024333	N/A	MRILKHLTGVTMSIGLKDKLRGWIDDVKDKMFNVFGHDKTEKEDLYETRWVWYHSALVIELFIIIVLLWYIAI*
Ga0114994_100142103	F005464	AGGA	MNIRDKDNALRMIGWTLSLLCMIIGSYFVWPHIHVAVLGIGFFYLGIRIFNLSTFKKYKEDRVKLLLKLDKW*
Ga0114994_100142106	F014792	N/A	MRNNERENYSWGVVQDMIEGEVSLAFKLREPPKMPSKKEIKQTIKKTVKQHRKDLLK*