Scaffold Ga0114994_10006618

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10006618
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8384
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032811	Metagenome	179	Y
F051476	Metagenome / Metatranscriptome	144	N
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000661811	F032811	N/A	MRVAPGCYFEQEEEESIDPIRGVKTSANIKEPTYRRKSFLEDIPDNYSERIMRLKGTTRIVPEREVRTPEGFAIAIAYNKSGYQVIPKEDLKYEIR*
Ga0114994_1000661813	F072760	GAG	MSMELHTLRAVKITKNIFELRRINTELRKFQQVVEVLEIRKSELENNIV*
Ga0114994_1000661814	F051476	GAG	MTYWKAKLIIKDKLHKTELFESVEKARLWSMKESKLAVSHRMFNDTSIVTEITSHEFA*