Scaffold Ga0114994_10002720

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10002720
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12946
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F011704	Metagenome / Metatranscriptome	288	Y
F039176	Metagenome	164	Y
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000272012	F011704	N/A	MNIENFQELIDISDYVDVVEEYLIRKFKDGGNYIIIDSYGDFLILDRDNVDNVFSTIWNDLYGSISEEIPYVLN*
Ga0114994_1000272019	F039176	GAG	LEIDLSLNRSLEELTSSYFEAHGAGVDIDNDSSEEERSDYYVLENYLSDLGAI*
Ga0114994_1000272023	F001048	AGAAG	MKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRISSLVNKRVRWELGSEGFAKWDSCGVKDIPTLAKAYRIS*
Ga0114994_1000272024	F072760	GAG	MSMERHTLRAVKITKNIFELNRLNTELRHLKICVKVLENRKIELEDSF*
Ga0114994_1000272027	F007052	GAG	MEKNETYFVARLINKGKFLSSEIFESLEEARLWAMAEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVS*