Scaffold Ga0114982_1002381

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1002381
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8262
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F070111	Metagenome / Metatranscriptome	123	N
F076103	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100238110	F023351	AGGA	MVKESKGGVFAPTDYPVIKRALHSYLIECMRTEGVSERDPHPDTAIISNLLHRLGRIQS*
Ga0114982_100238120	F076103	GGAGG	MRCRINSDDWEDLGKVYFVHALNNRANSTAVALVLEDDGGNIHKRVVASHQIEWVEE*
Ga0114982_10023816	F070111	AGAAGG	MTKISVELDVEQFDKLVVEELIRTREAFLNDLGANNHVFVYGDQEADDIEIQKHIDSLDDLIKWFGTPEQVKKVFGDED*
Ga0114982_10023817	F045097	AGG	MKTDEIKGKMIEAIPYVAVFGIAALAVYGVTKLVEATKELDFPLDFGYDEYLDKIIDEQGK*