Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1000558 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1000558 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19827
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19827

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100055813	F001176	GAG	MSDDGTGMVTPPNSEPSGAVTSQEVGRKKPSQGKFHSGPRPPTKIDRNKHGIRRETTFGPKKTKPKKV*
Ga0114982_100055814	F001280	AGGAG	MCIECGCESVGSESGIANIPGGILDTSRDGEAGLTLNMTATPEQRESFINE*
Ga0114982_100055822	F037227	AGG	MANNQVTVLEGIIEDISIELYQKLWNAIPAEEQNEESSKAIGLNSKETTLFIIQRFMDKFNAAAEELKDK*
Ga0114982_100055827	F002060	N/A	MTIDPISLIIPICTALLGGVGASLLSGRREYKKEQIRQKEREQDHLKIELKDLKLALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDMNRLD*
Ga0114982_100055828	F000671	AGGA	MEKILCYSCNKSKNKLNVRKSALLPINLLMCESCISGKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV*
Ga0114982_100055834	F003582	N/A	MNNYRIKIEVDAEVQAFSENDAVDYVNDIFGIDEEIKNIKVVSVKEK*
Ga0114982_100055844	F000376	AGGA	MSEYQDRAKECKCCGKHVPLPTVLKEYNGIVMCPTTFANVVEYKRIWKNLGVRPQGNVRKHFSEYVQQIVEQTIDKNEDGSLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1000558

Overview

Ecosystem & Geography

Associated Families

Sequences